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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-04-22 15:54:35 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-04-22 16:35:30 +0200 |
| commit | b829aeefb8488586ffe6229526d806372815046e (patch) | |
| tree | 783be05b9a092899212c21d80d144b373e1a06d0 | |
| parent | 2082dfde93504980099d81f0675cc4a70c388603 (diff) | |
gnu: Add r-metaskat.
* gnu/packages/cran.scm (r-metaskat): New variable.
Change-Id: I9f9917ca4ecf4a15a8926df0b6dfad0f517a31dd
| -rw-r--r-- | gnu/packages/cran.scm | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ab230a45f8..ee0aac7f7a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -36870,6 +36870,28 @@ meta-analyses accounting for known correlation structures (e.g. due to phylogenetic relatedness) can also be conducted.") (license license:gpl2+))) +(define-public r-metaskat + (package + (name "r-metaskat") + (version "0.82") + (source + (origin + (method url-fetch) + (uri (cran-uri "MetaSKAT" version)) + (sha256 + (base32 "0cbj3xfsnwn4ibqqs12sqyhhaj24ydjpyl1p1gy1dl5405j58ncl")))) + (properties `((upstream-name . "MetaSKAT"))) + (build-system r-build-system) + (propagated-inputs (list r-skat)) + (home-page "https://cran.r-project.org/package=MetaSKAT") + (synopsis "Meta analysis for SNP-Set (Sequence) kernel association test") + (description + "This package provides functions for Meta-analysis Burden Test, Sequence +Kernel Association Test (SKAT) and Optimal SKAT (SKAT-O) by Lee et al. (2013) +<doi:10.1016/j.ajhg.2013.05.010>. These methods use summary-level score +statistics to carry out gene-based meta-analysis for rare variants.") + (license license:gpl2+))) + (define-public r-altmeta (package (name "r-altmeta") |