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authorRicardo Wurmus <rekado@elephly.net>2024-01-20 19:43:18 +0100
committerRicardo Wurmus <rekado@elephly.net>2024-01-20 19:45:26 +0100
commit6f93502ced7cb288e97f7a89d4f531b8982c0ada (patch)
tree65986e53fe04f907a7d95603553f9a84fc30c68a /gnu/packages
parent4e706e6b183d0cd19e77ab74b605f5d50632f34c (diff)
gnu: Add r-genomicstate.
* gnu/packages/bioconductor.scm (r-genomicstate): New variable. Change-Id: I1b86c8e849af7b69b5fa9ea2a0e43b4e3e1850b2
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioconductor.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index aafbc7a828..8554228c0e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -16289,6 +16289,37 @@ type and symbol colors.")
position-specific scores within R and Bioconductor.")
(license license:artistic2.0)))
+(define-public r-genomicstate
+ (package
+ (name "r-genomicstate")
+ (version "0.99.15")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomicState" version
+ 'annotation))
+ (sha256
+ (base32 "1r7z3n6wyrd2cclj5b7sg15wpmjdh9k5b1hjlw7jjx8j384l7l1h"))))
+ (properties `((upstream-name . "GenomicState")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-annotationdbi
+ r-annotationhub
+ r-bumphunter
+ r-derfinder
+ r-genomeinfodb
+ r-genomicfeatures
+ r-iranges
+ r-org-hs-eg-db
+ r-rtracklayer))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/LieberInstitute/GenomicState")
+ (synopsis "Build and access GenomicState objects")
+ (description
+ "This package contains functions for building @code{GenomicState} objects
+from different annotation sources such as Gencode. It also provides access to
+these files at JHPCE.")
+ (license license:artistic2.0)))
+
(define-public r-atacseqqc
(package
(name "r-atacseqqc")