diff options
| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-06-27 23:28:24 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-10-27 15:35:22 +0200 |
| commit | c969517cec2b403c13cb9150e12a4e6804b5326e (patch) | |
| tree | 71875e6be0a5685789189b3546141515dd7b124d /gnu | |
| parent | 0ad89a84c3e86093b4c17fd926a04cfc0228c6da (diff) | |
gnu: Add r-bader.
* gnu/packages/bioconductor.scm (r-bader): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2e13a86774..111785800f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2404,6 +2404,30 @@ Nimblegen, cDNA, etc.). Note that BAC does not deal with normalization, so you will have to normalize your data beforehand.") (license license:artistic2.0))) +(define-public r-bader + (package + (name "r-bader") + (version "1.34.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "BADER" version)) + (sha256 + (base32 + "0i5x1r2ns1hxhqk5jyfqird81hck1hllvvgx5bn0rb5vl99g8spm")))) + (properties `((upstream-name . "BADER"))) + (build-system r-build-system) + (home-page "https://bioconductor.org/packages/BADER") + (synopsis + "Bayesian analysis of differential expression in RNA sequencing data") + (description + "The BADER package is intended for the analysis of RNA sequencing data. +The algorithm fits a Bayesian hierarchical model for RNA sequencing count +data. BADER returns the posterior probability of differential expression for +each gene between two groups A and B. The joint posterior distribution of the +variables in the model can be returned in the form of posterior samples, which +can be used for further down-stream analyses such as gene set enrichment.") + (license license:gpl2))) + (define-public r-biocversion (package (name "r-biocversion") |